Step 1 - Description from a file

TODO: Add step description here.

Upload data!

Upload the raw CSV exported from KoboToolbox.

What happens next

The file is copied into the project run directory as 00_raw_data.csv.
Step 1 will run a quality check and generate:
- an HTML report,
- kobo_output_tocheck.csv,
- kobo_output_clean.csv.

Tips

Prefer UTF-8 encoded CSV.
Do not edit column names in the export.

Upload CSV file

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01 - Raw data quality check

Description

Runs the Step 1 quality check from the Ginko-Rfun repository.

Outputs: report HTML + kobo_output_tocheck.csv + kobo_output_clean.csv.

Step 1 - Description from a file

TODO: Add step description here.

Parameters

Keep records flagged for manual review in the CLEAN output (keep_to_check)

Process

Result

Run status

Report preview

Download to-check CSV Download clean CSV Download report (HTML) Download step log

02 - Clean & extract indicators data

Description

Transforms quality-checked raw data into indicator-specific datasets required for further analysis (Ne, PM, DNA-based).

Step 2 - Description from file

TODO: Add step description here.

Parameters

This step does not require any parameters.

Process

Result

Step 2 outputs (placeholder).

Download output

03 - Estimate indicators

Description

Calculates genetic diversity indicators required by the Global Biodiversity Framework (Ne 500, PM, DNA-based).

Step 3 - Description from a file

TODO: Add step description here.

Parameters

Ne threshold

Process

Result

Step 3 outputs (placeholder).

Download output

04 - Country report

Description

Generates a country-level report summarizing genetic diversity indicators.

Step 4 - Description from a file

TODO: Add step description here.

Parameters

Country name

Process

Result

Step 4 outputs (placeholder).

Download report